Publications
2010
- Aransay A.M., Matthiesen R. and Regueiro M.M. (2010).
SNP-PHAGE. High throughput SNP discovery pipeline.Bioinformatics in clinical omics research, In Methods Mol Biol (Humana Press Inc.)593:49-65. - Baurain D., Brinkmann H., Petersen J., Rodríguez-Ezpeleta N., Stechmann A., Demoulin V., Roger A.J., Burger G., Lang B.F., Philippe H. (2010).
Phylogenomic evidence for separate acquisition of plastids in cryptophytes, haptophytes and stramenopiles.
Mol Biol Evol.27:1698-709.
- Gubb E. and Matthiesen R. (2010).
Introduction to omics.Bioinformatics in clinical omics research, In Methods Mol Biol (Humana Press Inc.)593:1-23. - Rodríguez-Ezpeleta N., Álvarez-Busto J., Imaz L., Regueiro M., Azcárate M.N., Bilbao R., Iriondo M., Gil A., Estonba A., Aransay A.M. (2010).
High-density SNP genotyping detects homogeneity of Spanish and French Basques, and confirms their genomic distinctiveness from other European populations.Hum Genet.128(1):113-117.
- Rodríguez-Ezpeleta N., Moreira D., Ruíz-Trillo I. (2010).
Protistas: Amoebozoa, Rhizaria, Excavata y Chromalveolata.
InEl árbol de la vida: sistemática y evolución de los seres vivos(P. Vargas and R. Zardoya eds.) Editorial Reverte, Barcelona, Spain. In press.
- Rodríguez-Suárez E., Gubb E., Frades Alzueta I. , Falcón-Pérez J. M. , Amorim A. , Elortza F., Matthiesen R. (2010).
Virtual expert mass spectrometrist: iTRAQ tool for database-dependent search, quantitation and result storage.Proteomics.10(8):1545-56.
2009
- Collao X., Palacios G., Sanbonmatsu-Gámez S., Pérez-Ruiz M., Negredo A.I., Navarro-Marí J.M., Grandadam M., Aransay A.M., Lipkin W.I., Tenorio A., Sánchez-Seco M.P. (2009).
Genetic diversity of toscana virus.Emerg Infect Dis.15:574-7. - Garrett M., Fullaondo A., Troxler L., Micklem G., Gubb D. (2009).
Identification and analysis of serpin-family genes by homology and synteny across the 12 sequenced Drosophilid genomes.BMC Genomics.10:489. - Hackenberg M., Sturm M., Langenberger D., Falcón-Pérez J.M., Aransay A.M. (2009)
miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments.Nucleic Acids Res.37: W77-W83. - Liu Y., Leigh J., Brinkmann H., Cushion M.T., Rodríguez-Ezpeleta N., Philippe H. and Lang B.F. (2009).
Phylogenomic analyses support the monophyly of Taphrinomycotina, including Schizosaccharomyces fission yeasts.Mol Biol Evol.26:27-34. - Otaegui D., Zuriarrain O., Castillo-Triviño T., Aransay A.M., Ruíz-Martinez J., Olaskoaga J., Marti-Masso J., Lopez de Munain A. (2009).
Association between synapsin III gene promoter SNPs and multiple sclerosis in Basque patients.Mult Scler.15:124-8. - Santin I., Castellanos-Rubio A., Aransay A.M., Gutierrez G., Gaztambide S., Rica I., Vicario J.L., Noble J.A., Castaño L., Bilbao J.R. (2009).
Exploring the diabetogenicity of the HLA-B18-DR3 CEH: independent association with T1D genetic risk close to HLA-DOA.Genes Immun.10(6):596-600. - Rodríguez-Ezpeleta N. and Philippe H. (2009).
Phylogenomics.
InEncyclopaedia of Microbiology (Elsevier Ltd. Oxford, UK)633-643. - Rodríguez-Ezpeleta N., Teijeiro S., Forget L., Burger G. and Lang B.F.(2009).
Generation of cDNA libraries: protists and fungi.Expressed Sequence Tags (ESTs), In Methods Mol Biol, (Humana Press Inc.)1-15.
2008
- Castellanos-Rubio A., Martin-Pagola A., Santín I., Hualde I., Aransay A.M., Castaño L., Vitoria J.C., Bilbao J.R. (2008).
Combined functional and positional gene information for the identification of susceptibility variants in celiac disease.Gastroenterology.134:738-46. - Martínez-Chantar M.L., Vázquez-Chantada M., Ariz U., Martínez N., Varela M., Luka Z., Capdevila A., Rodríguez J., Aransay A.M., Matthiesen R., Yang H., Calvisi D.F., Esteller M., Fraga M., Lu S.C., Wagner C., Mato J.M. (2008).
Loss of the glycine N-methyltransferase gene leads to steatosis and hepatocellular carcinoma in mice.Hepatology.47:1191-9. - Santin I., Castellanos-Rubio A., Aransay A.M., Castaño L., Vitoria J.C., Bilbao J.R. (2008).
The functional R620W variant of the PTPN22 gene is associated with celiac disease.Tissue Antigens.71:247-9.
2007
- O'Doherty C., Roos I.M., Antiguedad A., Aransay A.M., Hillert J., Vandenbroeck K. (2007).
ITGA4 polymorphisms and susceptibility to multiple sclerosis.J Neuroimmunol.189:151-7. - Rodríguez-Ezpeleta N., Brinkmann H., Burger G., Roger A.J., Gray M.W., Philippe H. and Lang B.F. (2007).
Toward the resolution of the eukaryotic tree: the phylogenetic positions of jakobids and cercozoans.Curr Biol.17:1420-1425. - Rodríguez-Ezpeleta N., Brinkmann H., Roure B., Lartillot N., Lang B.F. and Philippe H. (2007).
Detecting and overcoming systematic errors in genome-scale phylogenies.Syst Biol.56:1-11. - Rodríguez-Ezpeleta N., Philippe H., Brinkmann H., Becker B. and Melkonian M. (2007).
Phylogenetic analyses of nuclear, mitochondrial and plastid multi-gene datasets support the placement of Mesostigma in the Streptophyta.Mol Biol Evol.24:723-731.
- Roure B., Rodríguez-Ezpeleta N. and Philippe H. (2007).
SCaFoS: a tool for Selection, Concatenation and Fusion of Sequences for phylogenomics.BMC Evol Biol.7 (Supp. 1): S2.
2006
- Bilbao J.R., Calvo B., Aransay A.M., Martin-Pagola A., Perez de Nanclares G., Aly T.A., Rica I., Vitoria J.C., Gaztambide S., Noble J., Fain P.R., Awdeh Z.L., Alper C.A., Castaño L. (2006).
Conserved extended haplotypes discriminate HLA-DR3-homozygous Basque patients with type 1 diabetes mellitus and celiac disease.Genes Immun.7:550-4. - Melero-Alcíbar R., Molina R., Aransay A.M. (2006).
Aportación al conocimiento de la fauna de culícidos (Diptera: Culicidae) de las Islas Baleares: isla de Ibiza.Boletín Sociedad Entomológica Aragonesa38:331-332. - Rodríguez-Ezpeleta N. and Philippe H. (2006).
Plastid origin: replaying the tape.Curr Biol.16:R53-R56.
2005
- Parvizi P., Mauricio I., Aransay A.M., Miles M.A., Ready P.D. (2005).
First detection of Leishmania major in peridomestic Phlebotomus papatasi from Isfahan province, Iran: comparison of nested PCR of nuclear ITS ribosomal DNA and semi-nested PCR of minicircle kinetoplast DNA.Acta Trop.93:75-83. - Rodríguez-Ezpeleta N., Brinkmann H., Burey S., Roure B., Burger G., Loffelhardt W., Bohnert H.J., Philippe H. and Lang B.F. (2005).
Monophyly of primary photosynthetic eukaryotes: green plants, red algae, and glaucophytes.Curr Biol.15:1325-1330.
2004
- Aransay A.M., Testa J.M., Morillas-Marquez F., Lucientes J., Ready P.D. (2004).
Distribution of sandfly species in relation to canine leishmaniasis from the Ebro Valley to Valencia, northeastern Spain.Parasitol Res.94:416-20.
2003
- Aransay A.M., Ready P.D., Morillas-Marquez F. (2003).
Population differentiation of Phlebotomus perniciosus in Spain following postglacial dispersal.Heredity.90:316-25. - Leigh J., Seif E., Rodríguez-Ezpeleta N., Jacob Y., Lang B.F. (2003).
Fungal evolution meets fungal genomics.
InHandbook of Fungal Biotechnology, 2nd ed. (D. Arora, ed.) pp. 145-161. Marcel Dekker Inc. New York, NY, USA.
2001
- Aransay A.M., Malarky G., Ready, P.D. (2001).
Isolation (with enrichment) and characterization of trinucleotide microsatellites from Phlebotomus perniciosus, a vector of Leishmania infantum.Molecular Ecology Notes.1:176-178.
2000
- Spyridaki I., Psaroulaki A., Aransay A.M., Scoulica E., Tselentis Y. (2000).
Diagnosis of quinolone resistant Coxiella burnetii strains by PCR-RFLP.Journal of Clinical Laboratory Analysis.14:59-63. - Aransay A.M., Scoulica E., Tselentis Y. (2000).
Detection and identification of Leishmania DNA within naturally infected sand flies by seminested PCR on minicircle kinetoplastic DNA.Appl Environ Microbiol.66:1933-8. - Aransay A.M., Scoulica E., Tselentis Y., Ready P.D. (2000).
Phylogenetic relationships of phlebotomine sandflies inferred from small subunit nuclear ribosomal DNA.Insect Mol Biol.9:157-68.
1999
- Aransay A.M., Scoulica E., Chaniotis B., Tselentis Y. (1999).
Typing of sandflies from Greece and Cyprus by DNA polymorphism of 18S rRNA gene.Insect Mol Biol.8:179-84.